SRR2015301

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 2000 WGS of grapevine (*Vitis vinifera*) yields a massive 84M reads spanning 25.4 Gb with 95.2% Q20, providing deep coverage for high-confidence SNP calling, haplotyping, and detection of disease resistance loci critical to viticulture. The large plant genome requires such depth. Search: grapevine WGS, *Vitis vinifera* genomics, crop improvement.

Data type / assay

WGS

Organism

Vitis vinifera

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 25365270826 reported

total reads 83990963 reported

n content pct 0.006 measured

pct q20 bases 95.2 measured

pct q30 bases 91.1 measured

gc content pct 35.8 measured

mean read length 151 measured

mean base quality 35.3 measured

adapter content pct 10.99 measured

duplication rate pct 2.79 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.1 measured ×1 100%

duplication rate pct 2.79 measured ×0.5 100%

adapter content pct 10.99 measured ×0.4 29%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0