SRR2021005

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

81/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq of Drosophila ananassae on Illumina HiSeq 2500 yields 10 billion bases from 65.5 million short reads at 92.3% Q20, providing exceptional transcriptome depth for comprehensive expression profiling.

Data type / assay

bulk-RNA-seq

Organism

Drosophila ananassae

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9954647960 reported

total reads 65491105 reported

n content pct 0.001 measured

pct q20 bases 92.3 measured

pct q30 bases 86.7 measured

gc content pct 45.6 measured

mean read length 76 measured

mean base quality 34.4 measured

adapter content pct 10.21 measured

duplication rate pct 42.65 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 81/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.7 measured ×1 84%

mean base quality 34.4 measured ×0.6 100%

adapter content pct 10.21 measured ×0.4 54%

duplication rate pct 42.65 measured ×0.4 72%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0