SRR202126

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina Genome Analyzer IIx whole-genome sequencing of Drosophila melanogaster delivering 7.5 billion bases at estimated 53.8x coverage with perfect base quality (100% Q20 and Q30). The dataset is highly suitable for de novo assembly refinement, small-variant discovery, and population genomics studies given the exceptional quality profile.

Data type / assay

WGS

Organism

Drosophila melanogaster

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 7529618288 reported

total reads 25786364 reported

mean coverage 53.8 extrapolated

n content pct 0.015 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 42.4 measured

mean read length 146 measured

mean base quality 30 measured

adapter content pct 0.25 measured

duplication rate pct 0.95 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 53.8 extrapolated ×1.2 100%

pct q30 bases 100 measured ×1 100%

duplication rate pct 0.95 measured ×0.5 100%

adapter content pct 0.25 measured ×0.4 100%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0