Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR2028038

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq from Cimex lectularius on an Illumina HiSeq 2500 platform, producing 7.8 billion bases with consistently high quality (98.6% Q20, 95.9% Q30, 42.6% GC) across 39 million reads. The dataset enables comprehensive transcriptome characterization, gene-discovery applications, and quantitative expression analysis in bedbug biology or vector-competence research.

Data type / assay
bulk-RNA-seq
Organism
Cimex lectularius
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 7880493084 reported
total reads 39012342 reported
n content pct 0.033 measured
pct q20 bases 98.6 measured
pct q30 bases 95.9 measured
gc content pct 42.6 measured
mean read length 100 measured
mean base quality 37 measured
adapter content pct 0.68 measured
duplication rate pct 29.4 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.9 measured ×1 100%
mean base quality 37 measured ×0.6 100%
adapter content pct 0.68 measured ×0.4 100%
duplication rate pct 29.4 measured ×0.4 100%
QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0