SRR2028040

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk-RNA-seq (Cimex lectularius). Grade A, excellent for reuse. All metrics are outstanding: Q30 of 96.7%, mean base quality of 37.3, and controlled duplication (30%). The high depth (32.6M reads) with perfect base quality enables high-confidence expression and variant analysis. All metrics measured.

Data type / assay

bulk-RNA-seq

Organism

Cimex lectularius

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6580339880 reported

total reads 32575940 reported

n content pct 0.003 measured

pct q20 bases 98.9 measured

pct q30 bases 96.7 measured

gc content pct 42.1 measured

mean read length 100 measured

mean base quality 37.3 measured

adapter content pct 0.37 measured

duplication rate pct 30.04 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.7 measured ×1 100%

mean base quality 37.3 measured ×0.6 100%

adapter content pct 0.37 measured ×0.4 100%

duplication rate pct 30.04 measured ×0.4 100%

QC cost 46 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0