Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR20428498

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Wastewater amplicon sequencing on MiniSeq produced 3.02 million 137.6 bp reads at 92.6% Q20 and 91% Q30, supporting robust microbial community analysis. The unusual 51.8% GC for wastewater suggests possible enrichment of high-GC actinobacteria or other environmental taxa; suitable for longitudinal pathogen surveillance or treatment efficacy assessment.

Data type / assay
amplicon
Organism
wastewater metagenome
Instrument
Illumina MiniSeq
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 832488918 reported
total reads 3018041 reported
n content pct 0.308 measured
pct q20 bases 92.6 measured
pct q30 bases 91 measured
gc content pct 51.8 measured
mean read length 137.6 measured
mean base quality 34.7 measured
adapter content pct 0 measured
duplication rate pct 13.18 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 75