Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
← Dataset search

SRR2044119

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

RNA-Seq of Homo sapiens on an Illumina HiSeq 2500 generates ~214 million reads spanning 32.2 billion bases at exceptional base quality (98.5% ≥Q20, 96.5% ≥Q30), enabling deep human transcriptome profiling for comprehensive gene expression analysis, rare transcript detection, and isoform quantification. The exceptional depth and quality are exceptional. Reuse for single-cell projection and population transcriptomics is well-supported.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 32189646150 reported
total reads 214597641 reported
n content pct 0.005 measured
pct q20 bases 98.5 measured
pct q30 bases 96.5 measured
gc content pct 52.6 measured
mean read length 75 measured
mean base quality 37.5 measured
adapter content pct 1.04 measured
duplication rate pct 76.18 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.5 measured ×1 100%
mean base quality 37.5 measured ×0.6 100%
adapter content pct 1.04 measured ×0.4 100%
duplication rate pct 76.18 measured ×0.4 0%
QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0