SRR2051618

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Schmidtea mediterranea

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2483037300 reported

total reads 54518685 reported

n content pct 0.003 measured

pct q20 bases 99.5 measured

pct q30 bases 98.1 measured

gc content pct 44 measured

mean read length 50 measured

mean base quality 38.7 measured

adapter content pct 41.8 measured

duplication rate pct 48.27 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.1 measured ×1 100%

mean base quality 38.7 measured ×0.6 100%

adapter content pct 41.8 measured ×0.4 0%

duplication rate pct 48.27 measured ×0.4 59%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0