SRR2060723

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq from carpenter ant Camponotus floridanus using HiSeq 2000, producing 33 million reads with high quality (87.9% Q30). This transcriptomic dataset enables expression profiling of social-behavior genes, caste-specific development, or division-of-labor mechanisms in this social-insect model.

Data type / assay

bulk-RNA-seq

Organism

Camponotus floridanus

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3362685500 reported

total reads 33626855 reported

n content pct 0 measured

pct q20 bases 95 measured

pct q30 bases 87.9 measured

gc content pct 35.7 measured

mean read length 50 measured

mean base quality 34.6 measured

adapter content pct 0.28 measured

duplication rate pct 35.43 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.9 measured ×1 90%

mean base quality 34.6 measured ×0.6 100%

adapter content pct 0.28 measured ×0.4 100%

duplication rate pct 35.43 measured ×0.4 88%

QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0