SRR2094645

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq of Anopheles gambiae on an Illumina HiSeq 2500 produces 14.5 million reads with exceptional quality (98.4% Q30) spanning 2.85 billion bases. The outstanding base quality and malaria vector annotation enable sensitive investigation of vector competence and immunity genes.

Data type / assay

bulk-RNA-seq

Organism

Anopheles gambiae

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2846327251 reported

total reads 14500980 reported

n content pct 0 measured

pct q20 bases 99.8 measured

pct q30 bases 98.4 measured

gc content pct 46.6 measured

mean read length 98.7 measured

mean base quality 37.5 measured

adapter content pct 0.03 measured

duplication rate pct 33.89 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.4 measured ×1 100%

mean base quality 37.5 measured ×0.6 100%

adapter content pct 0.03 measured ×0.4 100%

duplication rate pct 33.89 measured ×0.4 91%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0