SRR2097988

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

49/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Homo sapiens

Instrument

PacBio RS

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 8.52 measured

checksum ok yes reported

total bases 2257974517 reported

total reads 163482 reported

mean coverage 0.7 extrapolated

n content pct 0 measured

sampled bases 60029122 measured

sampled reads 6011 measured

gc content pct 40.6 measured

polyg tail pct 0.08 measured

read length sd 10661.9 measured

quality dropoff 1 measured

read length max 59594 measured

read length min 15 measured

read length n50 21166 measured

max base quality 15 measured

mean read length 9986.5 measured

max n pct per pos 0 measured

mean base quality 8.6 measured

pct reads lt 100bp 1.3 measured

read length median 5987 measured

adapter content pct 0 measured

median read quality 7.5 measured

duplication rate pct 0.08 measured

overrepresented top pct 0.1 measured

How this grade was computed

Weighted mean of 5 scored metric(s) → 49/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 0.7 extrapolated ×1.2 0%

read length n50 21166 measured ×1 100%

mean base quality 8.6 measured ×0.8 0%

duplication rate pct 0.08 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0