Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR2105817

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq of parasitoid wasp Cotesia rubecula via HiSeq 2000, yielding 33 million reads with high base quality (88.2% Q30). This transcriptomic dataset addresses host-parasitoid molecular interactions, venom evolution, or behavioral cues, with depth sufficient for quantitative cross-condition comparisons.

Data type / assay
bulk-RNA-seq
Organism
Cotesia rubecula
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 6747102192 reported
total reads 33401496 reported
n content pct 0.088 measured
pct q20 bases 93.8 measured
pct q30 bases 88.2 measured
gc content pct 39.8 measured
mean read length 101 measured
mean base quality 34.8 measured
adapter content pct 1.96 measured
duplication rate pct 23.85 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.2 measured ×1 91%
mean base quality 34.8 measured ×0.6 100%
adapter content pct 1.96 measured ×0.4 100%
duplication rate pct 23.85 measured ×0.4 100%
QC cost 40 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0