SRR210782

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina Genome Analyzer IIx whole-genome sequencing of Drosophila melanogaster, producing 5.1 billion bases at estimated 36.5x coverage with moderate quality (90.1% Q20, 81.7% Q30). The dataset supports genome-wide association studies and variant calling, with quality metrics indicative of the older Genome Analyzer IIx platform era.

Data type / assay

WGS

Organism

Drosophila melanogaster

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5106608712 reported

total reads 17488386 reported

mean coverage 36.5 extrapolated

n content pct 0.003 measured

pct q20 bases 90.1 measured

pct q30 bases 81.7 measured

gc content pct 42.3 measured

mean read length 146 measured

mean base quality 33.1 measured

adapter content pct 0.29 measured

duplication rate pct 0.96 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 36.5 extrapolated ×1.2 100%

pct q30 bases 81.7 measured ×1 59%

duplication rate pct 0.96 measured ×0.5 100%

adapter content pct 0.29 measured ×0.4 100%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0