SRR210784

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome Illumina sequencing of D. melanogaster using Genome Analyzer IIx, generating 19 million reads at 41× coverage with moderate Q30 base quality (80.1%). This WGS dataset supports variant calling and genomic comparisons, though the lower base-quality threshold may warrant variant-confidence filtering.

Data type / assay

WGS

Organism

Drosophila melanogaster

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5701580612 reported

total reads 19525961 reported

mean coverage 40.7 extrapolated

n content pct 0.003 measured

pct q20 bases 88.2 measured

pct q30 bases 80.1 measured

gc content pct 42.2 measured

mean read length 146 measured

mean base quality 32.5 measured

adapter content pct 0.28 measured

duplication rate pct 8.7 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 40.7 extrapolated ×1.2 100%

pct q30 bases 80.1 measured ×1 51%

duplication rate pct 8.7 measured ×0.5 98%

adapter content pct 0.28 measured ×0.4 100%

QC cost 40 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0