Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
← Dataset search

SRR2124012

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq from parasitoid wasp Lysiphlebus fabarum via HiSeq 2500, producing 3.6 million reads with excellent base quality (94.6% Q30). This lower-depth short-read transcriptomic dataset suits targeted expression studies of specific tissues or developmental stages; shallow sequencing may require optimized assembly or filtering strategies.

Data type / assay
bulk-RNA-seq
Organism
Lysiphlebus fabarum
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 368313064 reported
total reads 3646664 reported
n content pct 0.012 measured
pct q20 bases 96.5 measured
pct q30 bases 94.6 measured
gc content pct 44 measured
mean read length 101 measured
mean base quality 36.5 measured
adapter content pct 2.02 measured
duplication rate pct 69.1 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.6 measured ×1 100%
mean base quality 36.5 measured ×0.6 100%
adapter content pct 2.02 measured ×0.4 100%
duplication rate pct 69.1 measured ×0.4 13%
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0