SRR2141617

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

amplicon

Organism

Homo sapiens

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 6.21 measured

checksum ok yes reported

total bases 642672606 reported

total reads 2300153 reported

n content pct 0 measured

pct q20 bases 98.6 measured

pct q30 bases 96.8 measured

pct reads q30 97.3 measured

sampled bases 261456845 measured

sampled reads 1878466 measured

gc content pct 42.2 measured

polyg tail pct 0 measured

read length sd 25 measured

quality dropoff 2 measured

read length max 150 measured

read length min 45 measured

read length n50 150 measured

max base quality 38 measured

mean read length 139.2 measured

max n pct per pos 0 measured

mean base quality 36.8 measured

pct reads lt 100bp 9.62 measured

read length median 150 measured

adapter content pct 0.03 measured

median read quality 37.6 measured

duplication rate pct 97.19 measured

mean target coverage 10.4 extrapolated

overrepresented top pct 3.08 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.8 measured ×1 100%

adapter content pct 0.03 measured ×0.5 100%

QC cost 25.6 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0