SRR2174326

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bemisia tabaci (whitefly) bulk RNA-seq from HiSeq 2000 with 6B bases and excellent quality (93.5% Q30), supporting robust gene expression analysis for pest resistance, reproduction, or virus transmission biology. The high quality and good depth are well-matched for this agriculturally important vector.

Data type / assay

bulk-RNA-seq

Organism

Bemisia tabaci

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6003282036 reported

total reads 29719218 reported

n content pct 0.003 measured

pct q20 bases 97.7 measured

pct q30 bases 93.5 measured

gc content pct 43.5 measured

mean read length 101 measured

mean base quality 36.3 measured

adapter content pct 0.12 measured

duplication rate pct 21.95 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.5 measured ×1 100%

mean base quality 36.3 measured ×0.6 100%

adapter content pct 0.12 measured ×0.4 100%

duplication rate pct 21.95 measured ×0.4 100%

QC cost 51 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0