SRR21856489

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

63/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

metagenome

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9671614800 reported

total reads 32238716 reported

n content pct 0.008 measured

pct q20 bases 99.1 measured

pct q30 bases 99.1 measured

gc content pct 45.4 measured

mean read length 150 measured

mean base quality 29.8 measured

adapter content pct 11.03 measured

duplication rate pct 58.83 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 63/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 99.1 measured ×1 100%

mean base quality 29.8 measured ×0.6 30%

adapter content pct 11.03 measured ×0.4 50%

duplication rate pct 58.83 measured ×0.4 36%

QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0