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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
100/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Populus trichocarpa
Instrument
Sequel II
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
6964300681
reported
total reads
393904
reported
n content pct
0
measured
pct q20 bases
97.6
measured
pct q30 bases
94.4
measured
gc content pct
34.4
measured
mean read length
17565.3
measured
mean base quality
71.4
measured
adapter content pct
0.03
measured
duplication rate pct
0
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 100/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
94.4
measured
×1
100%
duplication rate pct
0
measured
×0.5
100%
adapter content pct
0.03
measured
×0.4
100%
QC cost
37 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0