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SRR2240643
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
100/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
15.35
measured
checksum ok
yes
reported
total bases
400000000
reported
total reads
4000000
reported
n content pct
0.003
measured
pct q20 bases
98.4
measured
pct q30 bases
95.5
measured
pct reads q30
96.3
measured
sampled bases
13710547
measured
sampled reads
293371
measured
gc content pct
42.6
measured
polyg tail pct
0
measured
read length sd
11.4
measured
read length max
110
measured
read length min
1
measured
read length n50
50
measured
max base quality
55
measured
mean read length
46.7
measured
max n pct per pos
0
measured
mean base quality
37.5
measured
pct reads lt 100bp
99.91
measured
read length median
50
measured
adapter content pct
0.64
measured
median read quality
38.9
measured
duplication rate pct
16.55
measured
overrepresented top pct
0.91
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
95.5
measured
×1
100%
mean base quality
37.5
measured
×0.6
100%
adapter content pct
0.64
measured
×0.4
100%
duplication rate pct
16.55
measured
×0.4
100%
QC cost
2.2 min compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0