SRR2268666

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Drosophila suzukii RNA-seq from HiSeq 2000 with perfect base quality (100% Q30) and 2.7B bases, enabling highly accurate transcript quantification and isoform detection despite moderate depth. The flawless quality is rare and valuable for baseline transcriptome profiling in this invasive pest species.

Data type / assay

bulk-RNA-seq

Organism

Drosophila suzukii

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2710458000 reported

total reads 15898017 reported

n content pct 0.002 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 52.8 measured

mean read length 100 measured

mean base quality 66.2 measured

adapter content pct 0 measured

duplication rate pct 39.55 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 66.2 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 39.55 measured ×0.4 79%

QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0