SRR22853027

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

38/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Ovis aries

Instrument

PacBio RS II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 6.65 measured

checksum ok yes reported

total bases 1349975083 reported

total reads 268323 reported

n content pct 0 measured

sampled bases 61031287 measured

sampled reads 12003 measured

gc content pct 42.4 measured

polyg tail pct 0 measured

read length sd 2439.3 measured

quality dropoff -0.9 measured

read length max 39518 measured

read length min 51 measured

read length n50 5701 measured

max base quality 15 measured

mean read length 5084.7 measured

max n pct per pos 0 measured

mean base quality 10.3 measured

pct reads lt 100bp 0.22 measured

read length median 5419 measured

adapter content pct 0.01 measured

median read quality 10.5 measured

duplication rate pct 5.29 measured

overrepresented top pct 1.2 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 38/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

read length n50 5701 measured ×1 16%

mean base quality 10.3 measured ×0.8 3%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 5.29 measured ×0.4 100%

QC cost 40 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0