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SRR22853030
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
36/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Ovis aries
Instrument
PacBio RS II
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
8.18
measured
checksum ok
yes
reported
total bases
1072385101
reported
total reads
263611
reported
n content pct
0
measured
sampled bases
59189263
measured
sampled reads
15181
measured
gc content pct
44.8
measured
polyg tail pct
0
measured
read length sd
2743.5
measured
quality dropoff
-0.4
measured
read length max
49205
measured
read length min
50
measured
read length n50
5521
measured
max base quality
15
measured
mean read length
3898.9
measured
max n pct per pos
0
measured
mean base quality
9.7
measured
pct reads lt 100bp
0.3
measured
read length median
3689
measured
adapter content pct
0
measured
median read quality
9.8
measured
duplication rate pct
1.92
measured
overrepresented top pct
0.56
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 36/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
read length n50
5521
measured
×1
15%
mean base quality
9.7
measured
×0.8
0%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
1.92
measured
×0.4
100%
QC cost
22 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0