SRR22853032

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

36/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Ovis aries

Instrument

PacBio RS II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 8.29 measured

checksum ok yes reported

total bases 1964565438 reported

total reads 426163 reported

n content pct 0 measured

sampled bases 60644398 measured

sampled reads 13109 measured

gc content pct 48.3 measured

polyg tail pct 0 measured

read length sd 2474.2 measured

quality dropoff -0.9 measured

read length max 49184 measured

read length min 51 measured

read length n50 5196 measured

max base quality 15 measured

mean read length 4626.2 measured

max n pct per pos 0 measured

mean base quality 10.1 measured

pct reads lt 100bp 0.24 measured

read length median 5043 measured

adapter content pct 0 measured

median read quality 10.4 measured

duplication rate pct 4.15 measured

overrepresented top pct 0.92 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 36/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

read length n50 5196 measured ×1 13%

mean base quality 10.1 measured ×0.8 1%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 4.15 measured ×0.4 100%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0