SRR2306547

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Triticum aestivum

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 9.6 measured

checksum ok yes reported

total bases 5100998600 reported

total reads 25504993 reported

n content pct 0 measured

pct q20 bases 94.9 measured

pct q30 bases 89 measured

pct reads q30 93.1 measured

sampled bases 87259875 measured

sampled reads 698079 measured

gc content pct 53.2 measured

polyg tail pct 0 measured

read length sd 0 measured

quality dropoff 1.3 measured

read length max 125 measured

read length min 125 measured

read length n50 125 measured

max base quality 37 measured

mean read length 125 measured

max n pct per pos 0 measured

mean base quality 34.6 measured

pct reads lt 100bp 0 measured

read length median 125 measured

adapter content pct 0 measured

median read quality 35.6 measured

duplication rate pct 15.54 measured

overrepresented top pct 0.11 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89 measured ×1 95%

mean base quality 34.6 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 15.54 measured ×0.4 100%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0