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SRR2306548
SRAProvenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
99/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Triticum aestivum
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
9.55
measured
checksum ok
yes
reported
total bases
5503689600
reported
total reads
27518448
reported
n content pct
0
measured
pct q20 bases
95
measured
pct q30 bases
89.3
measured
pct reads q30
93.3
measured
sampled bases
87534500
measured
sampled reads
700276
measured
gc content pct
53
measured
polyg tail pct
0
measured
read length sd
0
measured
quality dropoff
1.5
measured
read length max
125
measured
read length min
125
measured
read length n50
125
measured
max base quality
37
measured
mean read length
125
measured
max n pct per pos
0
measured
mean base quality
34.6
measured
pct reads lt 100bp
0
measured
read length median
125
measured
adapter content pct
0
measured
median read quality
35.6
measured
duplication rate pct
13.54
measured
overrepresented top pct
0.1
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 99/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
89.3
measured
×1
97%
mean base quality
34.6
measured
×0.6
100%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
13.54
measured
×0.4
100%
QC cost
18 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0