SRR2537274

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

70/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

D. suzukii RNA-seq from NextSeq 500 with 5.2B bases and 79% Q30, offering deeper coverage than SRR2537277 with the benefit of longer NextSeq reads. Suitable for comprehensive transcriptome assembly, splicing variant discovery, and differential expression analysis in this pest insect.

Data type / assay

bulk-RNA-seq

Organism

Drosophila suzukii

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5295426012 reported

total reads 35160360 reported

n content pct 0.019 measured

pct q20 bases 88.7 measured

pct q30 bases 79 measured

gc content pct 45.6 measured

mean read length 75.3 measured

mean base quality 32.2 measured

adapter content pct 0.01 measured

duplication rate pct 19.54 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 70/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 79 measured ×1 45%

mean base quality 32.2 measured ×0.6 70%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 19.54 measured ×0.4 100%

QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0