SRR2558798

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

78/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Acinetobacter baumannii WGA on HiSeq 2000 with 1.4B bases and 85.3% Q30, offering adequate coverage and moderate quality for resistance profiling and outbreak typing. Lower depth than some runs limits population-scale inference.

Data type / assay

WGS

Organism

Acinetobacter baumannii

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1436258582 reported

total reads 7110191 reported

n content pct 0.008 measured

pct q20 bases 92.7 measured

pct q30 bases 85.3 measured

gc content pct 41.2 measured

mean read length 101 measured

mean base quality 33.8 measured

adapter content pct 3.07 measured

duplication rate pct 16.19 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 78/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.3 measured ×1 77%

duplication rate pct 16.19 measured ×0.5 74%

adapter content pct 3.07 measured ×0.4 85%

QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0