Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR2558799

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

78/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing of Acinetobacter baumannii on an Illumina HiSeq 2000 yields ~2 million reads at moderate base quality (94.5% ≥Q20, 85.4% ≥Q30), enabling genome assembly of this multidrug-resistant opportunistic pathogen for surveillance and infection control studies. The lower coverage and quality compared to other A. baumannii datasets may limit resolution of complex structural variants. Reuse requires careful quality assessment.

Data type / assay
WGS
Organism
Acinetobacter baumannii
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 409489956 reported
total reads 2027178 reported
n content pct 0.015 measured
pct q20 bases 94.5 measured
pct q30 bases 85.4 measured
gc content pct 40.7 measured
mean read length 101 measured
mean base quality 34 measured
adapter content pct 2.04 measured
duplication rate pct 18.48 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 78/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.4 measured ×1 77%
duplication rate pct 18.48 measured ×0.5 67%
adapter content pct 2.04 measured ×0.4 93%
QC cost 56 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0