SRR2558800

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

81/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome assay (WGA) of the nosocomial pathogen Acinetobacter baumannii using HiSeq 2000, producing 10 million short reads with high base quality (88% Q30). This bacterial WGS dataset enables chromosomal variant discovery, antibiotic-resistance gene profiling, and phylogenomic reconstruction of this clinically significant organism.

Data type / assay

WGS

Organism

Acinetobacter baumannii

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2035304732 reported

total reads 10075766 reported

n content pct 0.016 measured

pct q20 bases 95.5 measured

pct q30 bases 88 measured

gc content pct 41.2 measured

mean read length 101 measured

mean base quality 34.8 measured

adapter content pct 2.23 measured

duplication rate pct 22.99 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 81/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88 measured ×1 90%

duplication rate pct 22.99 measured ×0.5 53%

adapter content pct 2.23 measured ×0.4 91%

QC cost 41 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0