Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR2558805

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Acinetobacter pittii whole genome amplified (WGA) and sequenced on Illumina HiSeq 2000, generating ~2B short reads with 40.9% GC and 88% Q30 bases. WGA introduces amplification bias and strand-specific artifacts, so this is best suited for large-scale structural variants and population surveys rather than fine-scale variant calling. Search for WGA bacterial genomes, Acinetobacter genomics, or HiSeq-era prokaryotic WGS.

Data type / assay
WGS
Organism
Acinetobacter pittii
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2022730030 reported
total reads 10013515 reported
n content pct 0.008 measured
pct q20 bases 94.4 measured
pct q30 bases 88 measured
gc content pct 40.9 measured
mean read length 101 measured
mean base quality 34.6 measured
adapter content pct 3.24 measured
duplication rate pct 18.23 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88 measured ×1 90%
duplication rate pct 18.23 measured ×0.5 68%
adapter content pct 3.24 measured ×0.4 84%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0