SRR2558807

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome amplicon sequencing of Acinetobacter baumannii on an Illumina HiSeq 2000 generates ~4.7 million reads at good base quality (96.7% ≥Q20), enabling complete genome assembly of this opportunistic pathogen for detection of antibiotic resistance determinants and virulence factors. The 40.9% GC content is typical. Reuse for epidemiological tracking and resistance gene identification is well-supported.

Data type / assay

WGS

Organism

Acinetobacter baumannii

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 953687450 reported

total reads 4721225 reported

n content pct 0.008 measured

pct q20 bases 96.7 measured

pct q30 bases 91.9 measured

gc content pct 40.9 measured

mean read length 101 measured

mean base quality 35.7 measured

adapter content pct 3.89 measured

duplication rate pct 20.36 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.9 measured ×1 100%

duplication rate pct 20.36 measured ×0.5 61%

adapter content pct 3.89 measured ×0.4 79%

QC cost 55 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0