SRR2558861

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

79/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Acinetobacter pittii WGA on MiSeq with 539M bases and excellent quality (97.4% Q30), enabling high-confidence resistance gene and virulence factor detection in this clinically important pathogen. Like SRR2558862, WGA limits structural variant recovery but quality is sufficient for SNP and resistance allele typing.

Data type / assay

WGS

Organism

Acinetobacter pittii

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 539382434 reported

total reads 1074467 reported

n content pct 0.008 measured

pct q20 bases 97.9 measured

pct q30 bases 97.4 measured

gc content pct 39.7 measured

mean read length 251 measured

mean base quality 37.5 measured

adapter content pct 32.37 measured

duplication rate pct 2.91 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 79/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.4 measured ×1 100%

duplication rate pct 2.91 measured ×0.5 100%

adapter content pct 32.37 measured ×0.4 0%

QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0