SRR2558910

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

82/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Acinetobacter baumannii WGA on HiSeq 2000 with 1.7B bases and 85.7% Q30, providing reasonable quality for resistance gene and clonal variant detection in this multidrug-resistant pathogen. The moderate depth suits outbreak investigation and epidemiological strain typing.

Data type / assay

WGS

Organism

Acinetobacter baumannii

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1711952424 reported

total reads 8475012 reported

n content pct 0.003 measured

pct q20 bases 94.3 measured

pct q30 bases 85.7 measured

gc content pct 40.4 measured

mean read length 101 measured

mean base quality 34.1 measured

adapter content pct 1.15 measured

duplication rate pct 15.61 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 82/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.7 measured ×1 79%

duplication rate pct 15.61 measured ×0.5 76%

adapter content pct 1.15 measured ×0.4 99%

QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0