Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR2558911

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

29/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing of Acinetobacter pittii on an Illumina HiSeq 2000 yields ~3.9 million reads at moderate base quality (83.3% ≥Q20, 70.9% ≥Q30), enabling genome assembly of this related opportunistic pathogen for comparison with A. baumannii and identification of species-specific genomic features. The lower quality suggests possible technical issues or this species' genomic characteristics. Reuse requires validation and quality control.

Data type / assay
WGS
Organism
Acinetobacter pittii
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 780040574 reported
total reads 3861587 reported
n content pct 0.002 measured
pct q20 bases 83.3 measured
pct q30 bases 70.9 measured
gc content pct 41.4 measured
mean read length 101 measured
mean base quality 29.6 measured
adapter content pct 12.7 measured
duplication rate pct 12.24 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 29/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 70.9 measured ×1 5%
duplication rate pct 12.24 measured ×0.5 87%
adapter content pct 12.7 measured ×0.4 16%
QC cost 56 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0