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SRR2677525
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
100/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
11.63
measured
checksum ok
yes
reported
total bases
7130334600
reported
total reads
35651673
reported
n content pct
0.009
measured
pct q20 bases
95.5
measured
pct q30 bases
90.5
measured
pct reads q30
90
measured
sampled bases
63702400
measured
sampled reads
637024
measured
gc content pct
49.3
measured
polyg tail pct
0.01
measured
read length sd
0
measured
quality dropoff
-5.5
measured
read length max
100
measured
read length min
100
measured
read length n50
100
measured
max base quality
41
measured
mean read length
100
measured
max n pct per pos
0.084
measured
mean base quality
35.3
measured
pct reads lt 100bp
0
measured
read length median
100
measured
adapter content pct
1.45
measured
median read quality
37
measured
duplication rate pct
7.91
measured
overrepresented top pct
0.01
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
90.5
measured
×1
100%
mean base quality
35.3
measured
×0.6
100%
adapter content pct
1.45
measured
×0.4
100%
duplication rate pct
7.91
measured
×0.4
100%
QC cost
16 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0