SRR26801482

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing of the ornate spiny lobster (Panulirus ornatus) using Illumina Genome Analyzer short-read technology, generating 313 million 100 bp reads totaling 93.8 Gb. The 96.1% Q20 and 91% Q30 metrics, combined with 43.2% GC content, provide solid coverage for genome assembly or variant detection in this non-model crustacean species.

Data type / assay

WGS

Organism

Panulirus ornatus

Instrument

Illumina Genome Analyzer

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 93834039600 reported

total reads 312780132 reported

n content pct 0.001 measured

pct q20 bases 96.1 measured

pct q30 bases 91 measured

gc content pct 43.2 measured

mean read length 150 measured

mean base quality 35.4 measured

adapter content pct 0.23 measured

duplication rate pct 15.64 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91 measured ×1 100%

duplication rate pct 15.64 measured ×0.5 76%

adapter content pct 0.23 measured ×0.4 100%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0