Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR2751058

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

45/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina HiSeq 2500 WGS of H. sapiens at extremely low coverage (~0.9×) totaling ~2.82 billion bases and ~14.1 million reads with Q30 92%; the ultra-low depth severely limits SNP calling confidence and structural variant detection—use only for reference-based variant calling or allele frequency estimation at population level.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2819846400 reported
total reads 14099232 reported
mean coverage 0.9 extrapolated
n content pct 0.006 measured
pct q20 bases 95.3 measured
pct q30 bases 92 measured
gc content pct 45.4 measured
mean read length 100 measured
mean base quality 35.4 measured
adapter content pct 77.44 measured
duplication rate pct 13.76 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 45/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 0.9 extrapolated ×1.2 0%
pct q30 bases 92 measured ×1 100%
duplication rate pct 13.76 measured ×0.5 82%
adapter content pct 77.44 measured ×0.4 0%
QC cost 56 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0