Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR2821369

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

50/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Short-read WGS from Illumina HiSeq 2000. This dataset fails QC due to inadequate base quality—only 71% of bases reach Q30, the most critical metric for variant calling accuracy, which cannot be compensated by excellent duplication control. Not recommended for reuse without substantial quality filtering and reassessment.

Data type / assay
WGS
Organism
Achromobacter xylosoxidans
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 758794618 reported
total reads 3756409 reported
n content pct 0 measured
pct q20 bases 86.1 measured
pct q30 bases 71 measured
gc content pct 66.9 measured
mean read length 101 measured
mean base quality 29.7 measured
adapter content pct 0.05 measured
duplication rate pct 2.16 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 50/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 71 measured ×1 5%
duplication rate pct 2.16 measured ×0.5 100%
adapter content pct 0.05 measured ×0.4 100%
QC cost 41 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0