SRR2839844

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina HiSeq 2000 RNA-seq of Bombyx mori silkworm generating ~9.21 billion bases and ~46.1 million reads at Q30 91.7%, representing one of the largest transcriptomes for studying metamorphosis, silk production, and lepidopteran developmental biology.

Data type / assay

bulk-RNA-seq

Organism

Bombyx mori

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9210968000 reported

total reads 46054840 reported

n content pct 0.004 measured

pct q20 bases 95.8 measured

pct q30 bases 91.7 measured

gc content pct 49.2 measured

mean read length 125 measured

mean base quality 35.8 measured

adapter content pct 0.26 measured

duplication rate pct 32.6 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.7 measured ×1 100%

mean base quality 35.8 measured ×0.6 100%

adapter content pct 0.26 measured ×0.4 100%

duplication rate pct 32.6 measured ×0.4 94%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0