SRR2846121

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

71/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina HiSeq 1000 RNA-seq of Spodoptera frugiperda fall armyworm generating ~2.07 billion bases and ~20.7 million reads at Q30 79.9%, capturing large-scale expression data for this globally significant crop pest Lepidopteran.

Data type / assay

bulk-RNA-seq

Organism

Spodoptera frugiperda

Instrument

Illumina HiSeq 1000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2074893400 reported

total reads 20748934 reported

n content pct 0.074 measured

pct q20 bases 88 measured

pct q30 bases 79.9 measured

gc content pct 44.9 measured

mean read length 100 measured

mean base quality 32.1 measured

adapter content pct 1.04 measured

duplication rate pct 21.92 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 71/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 79.9 measured ×1 50%

mean base quality 32.1 measured ×0.6 68%

adapter content pct 1.04 measured ×0.4 100%

duplication rate pct 21.92 measured ×0.4 100%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0