SRR2857267

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bemisia tabaci whitefly RNA-seq on HiSeq 2000 (7M reads, 345M bases) with perfect quality (100% Q20 and Q30 bases, 45.3% GC). The exceptional accuracy across all reads makes this a premium resource for variant calling, isoform discovery, and sensitive detection of lowly expressed whitefly-specific genes despite modest sequencing depth.

Data type / assay

bulk-RNA-seq

Organism

Bemisia tabaci

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 345249982 reported

total reads 7045918 reported

n content pct 0.002 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 45.3 measured

mean read length 49 measured

mean base quality 69.3 measured

adapter content pct 0 measured

duplication rate pct 42.06 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 69.3 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 42.06 measured ×0.4 73%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0