Corpus 1,283 assessed · 1,184 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR2857268

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

RNA-Seq of Bemisia tabaci on an Illumina HiSeq 2000 yields ~6.9 million reads at exceptional base quality (100% ≥Q20, 100% ≥Q30), providing high-confidence transcriptome data for this whitefly pest with unusually high reported quality scores suggesting potential data processing artifacts requiring verification. The dataset supports gene expression studies if quality metrics are confirmed. Independent QC assessment is essential.

Data type / assay
bulk-RNA-seq
Organism
Bemisia tabaci
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 339996545 reported
total reads 6938705 reported
n content pct 0.001 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 44.3 measured
mean read length 49 measured
mean base quality 69.3 measured
adapter content pct 0 measured
duplication rate pct 39.29 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
mean base quality 69.3 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 39.29 measured ×0.4 79%
QC cost 43 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0