SRR2911432

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

71/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina HiSeq 2000 RNA-seq of Locusta migratoria desert locust generating ~7.12 billion bases and ~35.2 million reads at Q30 84%, capturing large-scale gene expression in this agriculturally significant pest grasshopper.

Data type / assay

bulk-RNA-seq

Organism

Locusta migratoria

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 7118901170 reported

total reads 35242085 reported

n content pct 0.009 measured

pct q20 bases 90.5 measured

pct q30 bases 84 measured

gc content pct 46.7 measured

mean read length 101 measured

mean base quality 33.5 measured

adapter content pct 0.02 measured

duplication rate pct 69.02 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 71/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84 measured ×1 70%

mean base quality 33.5 measured ×0.6 92%

adapter content pct 0.02 measured ×0.4 100%

duplication rate pct 69.02 measured ×0.4 13%

QC cost 43 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0