SRR2912792

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina HiSeq 2000 WGS of human gut metagenome generating ~4.18 billion bases and ~22.9 million reads at exceptional Q30 (98.7%) with zero N-content, enabling high-confidence metagenomic variant calling and microbial community composition profiling via short-read sequencing.

Data type / assay

WGS

Organism

human gut metagenome

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 4183867375 reported

total reads 22884207 reported

n content pct 0 measured

pct q20 bases 99.9 measured

pct q30 bases 98.7 measured

gc content pct 48.9 measured

mean read length 93.2 measured

mean base quality 37.4 measured

adapter content pct 0 measured

duplication rate pct 0.91 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.7 measured ×1 100%

duplication rate pct 0.91 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 47 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0