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SRR2965657
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
83/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Citrobacter freundii
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
6.61
measured
checksum ok
yes
reported
total bases
570367770
reported
total reads
1888635
reported
n content pct
0.016
measured
pct q20 bases
93.6
measured
pct q30 bases
83.8
measured
pct reads q30
84.4
measured
sampled bases
98362306
measured
sampled reads
651406
measured
gc content pct
51.5
measured
polyg tail pct
0
measured
read length sd
0
measured
quality dropoff
-9.3
measured
read length max
151
measured
read length min
151
measured
read length n50
151
measured
max base quality
41
measured
mean read length
151
measured
max n pct per pos
0.114
measured
mean base quality
33.4
measured
pct reads lt 100bp
0
measured
read length median
151
measured
adapter content pct
0.03
measured
median read quality
35.1
measured
duplication rate pct
9.14
measured
overrepresented top pct
0
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 83/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
83.8
measured
×1
69%
duplication rate pct
9.14
measured
×0.5
96%
adapter content pct
0.03
measured
×0.4
100%
QC cost
26 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0