SRR2968143

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

59/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina HiSeq 2000 WGS of Bacillus anthracis pathogen totaling ~11.99 billion bases and ~64.5 million reads at Q30 81.5%, supporting comprehensive genomic variant discovery in this clinically important bacterial species.

Data type / assay

WGS

Organism

Bacillus anthracis

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 11988367926 reported

total reads 64453591 reported

n content pct 0 measured

pct q20 bases 87.7 measured

pct q30 bases 81.5 measured

gc content pct 43.9 measured

mean read length 93 measured

mean base quality 32.3 measured

adapter content pct 1.36 measured

duplication rate pct 29.67 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 59/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 81.5 measured ×1 57%

duplication rate pct 29.67 measured ×0.5 32%

adapter content pct 1.36 measured ×0.4 97%

QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0