Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR2968216

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

23/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bacillus anthracis whole-genome sequencing on Illumina MiSeq (11.7M reads, 7.02B bases, Q20 71.1%) generates moderate base quality typical of benchtop instruments. The high-depth output enables variant discovery and phylogenetic resolution for epidemiologic or biodefense applications despite lower per-base accuracy than high-throughput platforms.

Data type / assay
WGS
Organism
Bacillus anthracis
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 7024499608 reported
total reads 11668604 reported
n content pct 0.003 measured
pct q20 bases 71.1 measured
pct q30 bases 63 measured
gc content pct 41.4 measured
mean read length 301 measured
mean base quality 28.7 measured
adapter content pct 81.09 measured
duplication rate pct 12.4 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 23/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 63 measured ×1 0%
duplication rate pct 12.4 measured ×0.5 86%
adapter content pct 81.09 measured ×0.4 0%
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0