Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR2969440

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Deep transcriptome profiling of Ooceraea biroi via Illumina HiSeq 2000 generates over 50 million short reads spanning ~10 billion bases, enabling robust quantification of transcriptional differences between clonal queens, workers, and reproductives in this unique parthenogenetic ant. The high read depth and 94% Q20 base quality support detection of low-abundance transcripts and splice variants. Short-read format limits resolution of complex alternatively-spliced isoforms.

Data type / assay
bulk-RNA-seq
Organism
Ooceraea biroi
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 10222261308 reported
total reads 50605254 reported
n content pct 0.031 measured
pct q20 bases 94 measured
pct q30 bases 88.4 measured
gc content pct 41.5 measured
mean read length 101 measured
mean base quality 34.5 measured
adapter content pct 0.61 measured
duplication rate pct 7.6 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.4 measured ×1 92%
mean base quality 34.5 measured ×0.6 100%
adapter content pct 0.61 measured ×0.4 100%
duplication rate pct 7.6 measured ×0.4 100%
QC cost 42 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0