Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR2983616

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

82/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

RNA-Seq of Gallus gallus on an ABI 5500xl SOLiD platform produces ~32 million reads with moderate base quality (90.5% ≥Q20) using the platform's distinct two-base encoding chemistry, offering an orthogonal perspective on avian transcriptomics. The reported 0% GC content is implausible and suggests metadata artifact requiring independent verification. SOLiD's read length and error profile differ from Illumina, requiring platform-specific QC.

Data type / assay
bulk-RNA-seq
Organism
Gallus gallus
Instrument
AB 5500xl Genetic Analyzer
Platform
ABI_SOLID
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2744882135 reported
total reads 32292731 reported
n content pct 0 measured
pct q20 bases 90.5 measured
pct q30 bases 85.6 measured
gc content pct 0 measured
mean read length 51 measured
mean base quality 36.8 measured
adapter content pct 0 measured
duplication rate pct 53.23 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 82/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.6 measured ×1 78%
mean base quality 36.8 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 53.23 measured ×0.4 48%
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0